Protein ZmOrphan117 | |
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Information | |
Orphans Name: | ZmOrphan117 |
Species: | Maize |
Orphans Family: | Orphans |
Gene Name(Synonym): | DBB6 |
Uniprot ID: | A0A1D6PDQ1 |
Subgenome: | 1 |
ZmOrphan117 is a protein in the Orphans family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Overview of domains present in v5 transcripts | |
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PF00643 | |
Zm00001eb246600_T002 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d017147 | DAPseq | sequence | fimo | position | |
Zm00001d017147 | DAPseq | sequence | fimo | position | |
Zm00001d017147 | ChIPseq | sequence | fimo | position | |
Zm00001d017147 | PChIPseq | sequence | fimo | position |
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSAKLPRCDVCQEKAAFIFCVEDRALFCQDC
DEPIHVPGTLSGNHQRYLATGIRVGLASASACSDACDAHDSDHHAPPKATIEPPHAAVSAAVQQVPSPPQFLPQGWAVDE
LLQFSDYESSDKLHKEPTLGFKELEWFADIDLFHEQAPKASRTLAEVPELFGYQAANDAAYYRPAKAAAGGGAGVRQSKK
ARIEVTDDEDYLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSAKLPRCDVCQEKAAFIFCVEDRALFCQDC
DEPIHVPGTLSGNHQRYLATGIRVGLASASACSDACDAHDSDHHAPPKATIEPPHAAVSAAVQQVPSPPQFLPQGWAVDE
LLQFSDYESSDKLHKEPTLGFKELEWFADIDLFHEQAPKASRTLAEVPELFGYQAANDAAYYRPAKAAAGGGAGVRQSKK
ARIEVTDDEDYLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSAKLPRCDVCQEKAAFIFCVEDRALFCQDC
DEPIHVPGTLSGNHQRYLATGIRVGLASASACSDACDAHDSDHHAPPKATIEPPHAAVSAAVQQVPSPPQFLPQGWAVDE
LLQFSDYESSDKLHKEPTLGFKELEWFADIDLFHEQAPKASRTLAEVPELFGYQAANDAAYYRPAKAAAGGGAGVRQSKK
ARIEVTDDEDYLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSAKLPRCDVCQEKAAFIFCVEDRALFCQDC
DEPIHVPGTLSGNHQRYLATGIRVGLASASACSDACDAHDSDHHAPPKATIEPPHAAVSAAVQQVPSPPQFLPQGWAVDE
LLQFSDYESSDKLHKEPTLGFKELEWFADIDLFHEQAPKASRTLAEVPELFGYQAANDAAYYRPAKAAAGGGAGVRQSKK
ARIEVTDDEDYLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSAKLPRCDVCQEKAAFIFCVEDRALFCQDC
DEPIHVPGTLSGNHQRYLATGIRVGLASASACSDACDAHDSDHHAPPKATIEPPHAAVSAAVQQVPSPPQFLPQGWAVDE
LLQFSDYESSDKLHKEPTLGFKELEWFADIDLFHEQAPKASRTLAEVPELFGYQAANDAAYYRPAKAAAGGGAGVRQSKK
ARIEVTDDEDYLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSAKLPRCDVCQEKAAFIFCVEDRALFCQDC
DEPIHVPGTLSGNHQRYLATGIRVGLASASACSDACDAHDSDHHAPPKATIEPPHAAVSAAVQQVPSPPQFLPQGWAVDE
LLQFSDYESSDKLHKEPTLGFKELEWFADIDLFHEQAPKASRTLAEVPELFGYQAANDAAYYRPAKAAAGGGAGVRQSKK
ARIEVTDDEDYLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSAKLPRCDVCQEKAAFIFCVEDRALFCQDC
DEPIHVPGTLSGNHQRYLATGIRVGLASASACSDACDAHDSDHHAPPKATIEPPHAAVSAAVQQVPSPPQFLPQGWAVDE
LLQFSDYESSDKLHKEPTLGFKELEWFADIDLFHEQAPKASRTLAEVPELFGYQAANDAAYYRPAKAAAGGGAGVRQSKK
ARIEVTDDEDYLIVPDLG
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF00643 |
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PF00643 |
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PF00643 |
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Hover here to show all domains |
CAGTACACAGAGGGAGACGAACCGG...
CAGTACACAGAGGGAGACGAACCGGGAGCCCCTGGCCACAAGTCTCCCCGGCGAGTCCTCCACCACAAGCTCGCCCGGCAGCTCACTGATTGCTCGAGTTGCGTGCTCGCGCAGGCGACTTATATGCACCACTCGCCCCCGCTGGATCTCCCCTCCCGGCCTCCCCTCCCTTGCCGTCCACTTCTTCCTCCACCACAGTCATCAGTGGCGTTATCCTCTTCGTTCTCGCCTCCCTGGTTGTTGTTGGCTGGGTGTTGGCGAGCTGGGAGTAGAGACCGAGAAGTGGAGCGGCCATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACGGTGGTGTGCTGCGCCGACGAGGCCGCGCTGTGCGCGCGCTGCGACGTCGAGATCCACGCCGCCAACAAGCTCGCGAGCAAGCACCAGCGCCTCCCGCTCGAGGCGCTCTCCGCCAAGCTCCCGCGCTGCGACGTCTGCCAGGAGAAAGCGGCGTTCATCTTCTGCGTGGAGGACCGGGCGCTCTTCTGCCAGGACTGCGACGAGCCCATCCACGTCCCGGGCACGCTCTCCGGGAACCACCAGCGCTACCTGGCCACCGGCATCCGCGTCGGCCTCGCCTCGGCTTCCGCCTGCAGCGACGCCTGCGACGCCCACGACTCCGACCACCACGCCCCGCCCAAGGCCACCATCGAGCCACCGCACGCCGCCGTCTCCGCCGCGGTGCAGCAGGTGCCCTCGCCGCCGCAGTTCCTGCCGCAGGGCTGGGCCGTCGACGAGCTCCTGCAGTTCTCCGACTACGAGTCCAGCGACAAGCTGCACAAGGAGCCGACGCTCGGGTTCAAGGAGCTGGAGTGGTTCGCCGACATCGACCTCTTCCACGAGCAGGCGCCCAAAGCCAGCAGGACGTTGGCGGAGGTGCCGGAGCTTTTCGGATACCAGGCGGCGAACGACGCGGCGTACTACAGGCCGGCCAAAGCCGCCGCCGGCGGCGGCGCTGGGGTTCGCCAGAGCAAGAAGGCCCGGATCGAGGTCACCGACGACGAGGATTACCTCATAGTCCCTGATCTTGGTTAAATAAGAGAGCGCAGGAGTTTTGTTTCGTCTCCTGATGTGTACGGTGTACCAGAGAAGAATTTTACTGTGTACAAGCTAGTGTCAAGTGTTGTGCATCTTTGACTGTAGTGTCGCTCAATTCTGAACATCTATTAAGCCACTTTTGTTGCTATGCTAATACCAGTCTGAGACACTGATGTTTTTAACAGAACATTTGTCTGATTTTGCTGACACTTCTA
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSAKLPRCDVCQEKAAFIFCVEDRALFCQDC
DEPIHVPGTLSGNHQRYLATGIRVGLASASACSDACDAHDSDHHAPPKATIEPPHAAVSAAVQQVPSPPQFLPQGWAVDE
LLQFSDYESSDKLHKEPTLGFKELEWFADIDLFHEQAPKASRTLADVPELFGYQAANDAAYYRPAKPPSAALGFARAKKG
PDRGHRRRGLPHSP
CAGTACACAGAGGGAGACGAACCGG...
CAGTACACAGAGGGAGACGAACCGGGAGCCCCTGGCCACAAGTCTCCCCGGCGAGTCCTCCACCACAAGCTCGCCCGGCAGCTCACTGATTGCTCGAGTTGCGTGCTCGCGCAGGCGACTTATATGCACCACTCGCCCCCGCTGGATCTCCCCTCCCGGCCTCCCCTCCCTTGCCGTCCACTTCTTCCTCCACCACAGTCATCAGTGGCGTTATCCTCTTCGTTCTCGCCTCCCTGGTTGTTGTTGGCTGGGTGTTGGCGAGCTGGGAGTAGAGACCGAGAAGTGGAGCGGCCATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACGGTGGTGTGCTGCGCCGACGAGGCCGCGCTGTGCGCGCGCTGCGACGTCGAGATCCACGCCGCCAACAAGCTCGCGAGCAAGCACCAGCGCCTCCCGCTCGAGGCGCTCTCCGCCAAGCTCCCGCGCTGCGACGTCTGCCAGGAGAAAGCGGCGTTCATCTTCTGCGTGGAGGACCGGGCGCTCTTCTGCCAGGACTGCGACGAGCCCATCCACGTCCCGGGCACGCTCTCCGGGAACCACCAGCGCTACCTGGCCACCGGCATCCGCGTCGGCCTCGCCTCGGCTTCCGCCTGCAGCGACGCCTGCGACGCCCACGACTCCGACCACCACGCCCCGCCCAAGGCCACCATCGAGCCACCGCACGCCGCCGTCTCCGCCGCGGTGCAGCAGGTGCCCTCGCCGCCGCAGTTCCTGCCGCAGGGCTGGGCCGTCGACGAGCTCCTGCAGTTCTCCGACTACGAGTCCAGCGACAAGCTGCACAAGGAGCCGACGCTCGGGTTCAAGGAGCTGGAGTGGTTCGCCGACATCGACCTCTTCCACGAGCAGGCGCCCAAAGCCAGCAGGACGTTGGCGGATGTGCCGGAGCTTTTCGGATACCAGGCGGCGAACGACGCGGCGTACTACAGGCCGGCCAAACCGCCGTCGGCGGCGCTGGGGTTCGCCAGAGCGAAGAAAGGCCCGGATCGAGGTCACCGACGACGAGGATTACCTCATAGTCCCTGATCTTGGTTAAATAAGAGAGCGCAGGAGTTTTGTTTCGTCTCCTGATGTGTACGGTGTACCAGAGAAGAATTTTACTGTGTACAAGCTAGTGTCAAGTGTTGTGCATCTTTGACTGTAGTGTCGCTCAATTCTGAACATCTATTAAGCCACTTTTGTTGCTATGCTAATACCAGTCTGAGACACTGATGTTTTTAAC
PGLPSLAVHFFLHHSHQWRYPLRSRLPGCCWLGVGELGVETEKWSGHEDPVRRVRGRGCHGGVLRRRGRAVRALRRRDPR
RQQAREQAPAPPARGALRQAPALRRLPGESGVHLLRGGPGALLPGLRRAHPRPGHALREPPALPGHRHPRRPRLGFRLQR
RLRRPRLRPPRPAQGHHRATARRRLRRGAAGALAAAVPAAGLGRRRAPAVLRLRVQRQAAQGADARVQGAGVVRRHRPLP
RAGAQSQQDVGGGAGAFRIPGGERRGVLQAGQSRRRRRRWGSPEQEGPDRGHRRRGLPHSP
CTCCCGGCCTCCCCTCCCTTGCCGT...
CTCCCGGCCTCCCCTCCCTTGCCGTCCACTTCTTCCTCCACCACAGTCATCAGTGGCGTTATCCTCTTCGTTCTCGCCTCCCTGGTTGTTGTTGGCTGGGTGTTGGCGAGCTGGGAGTAGAGACCGAGAAGTGGAGCGGCCATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACGGTGGTGTGCTGCGCCGACGAGGCCGCGCTGTGCGCGCGCTGCGACGTCGAGATCCACGCCGCCAACAAGCTCGCGAGCAAGCACCAGCGCCTCCCGCTCGAGGCGCTCTCCGCCAAGCTCCCGCGCTGCGACGTCTGCCAGGAGAAAGCGGCGTTCATCTTCTGCGTGGAGGACCGGGCGCTCTTCTGCCAGGACTGCGACGAGCCCATCCACGTCCCGGGCACGCTCTCCGGGAACCACCAGCGCTACCTGGCCACCGGCATCCGCGTCGGCCTCGCCTCGGCTTCCGCCTGCAGCGACGCCTGCGACGCCCACGACTCCGACCACCACGCCCCGCCCAAGGCCACCATCGAGCCACCGCACGCCGCCGTCTCCGCCGCGGTGCAGCAGGTGCCCTCGCCGCCGCAGTTCCTGCCGCAGGGCTGGGCCGTCGACGAGCTCCTGCAGTTCTCCGACTACGAGTCCAGCGACAAGCTGCACAAGGAGCCGACGCTCGGGTTCAAGGAGCTGGAGTGGTTCGCCGACATCGACCTCTTCCACGAGCAGGCGCCCAAAGCCAGCAGGACGTTGGCGGAGGTGCCGGAGCTTTTCGGATACCAGGCGGCGAACGACGCGGCGTACTACAGGCCGGCCAAAGCCGCCGCCGGCGGCGGCGCTGGGGTTCGCCAGAGCAAGAAGGCCCGGATCGAGGTCACCGACGACGAGGATTACCTCATAGTCCCTGATCTTGGTTAAATAAGAGAGCGCAGGAGTTTTGTTTCGTCTCCTGATGTGTACGGTGTACCAGAGAAGAATTTTACTGTGTACAAGCTAGTGTCAAGTGTTGTGCATCTTTGACTGTAGTGTCGCTCAATTCTGAACATCTATTAAGCCACTTTTGTTGCTATGCTAATACCAGTCTGAGACACTGATGTTTTT
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSAKLPRCDVCQMRYTHDVRRKQANLASRSQ
EKAAFIFCVEDRALFCQDCDEPIHVPGTLSGNHQRYLATGIRVGLASASACSDACDAHDSDHHAPPKATIEPPHAAVSAA
VQQVPSPPQFLPQGWALHKEPTLGFKELEWFADIDLFHEQAPKASRTLAEVPELFGYQAANDAAYYRPAKAAAGGGAGVR
QSKKARIEVTDDEDYLIVPDLG
ATGAAGATCCAGTGCGACGCGTGCG...
ATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACGGTGGTGTGCTGCGCCGACGAGGCCGCGCTGTGCGCGCGCTGCGACGTCGAGATCCACGCCGCCAACAAGCTCGCGAGCAAGCACCAGCGCCTCCCGCTCGAGGCGCTCTCCGCCAAGCTCCCGCGCTGCGACGTCTGCCAGATGCGCTACACGCACGACGTACGGCGCAAGCAAGCTAACCTTGCTTCGCGGTCGCAGGAGAAAGCGGCGTTCATCTTCTGCGTGGAGGACCGGGCGCTCTTCTGCCAGGACTGCGACGAGCCCATCCACGTCCCGGGCACGCTCTCCGGGAACCACCAGCGCTACCTGGCCACCGGCATCCGCGTCGGCCTCGCCTCGGCTTCCGCCTGCAGCGACGCCTGCGACGCCCACGACTCCGACCACCACGCCCCGCCCAAGGCCACCATCGAGCCACCGCACGCCGCCGTCTCCGCCGCGGTGCAGCAGGTGCCCTCGCCGCCGCAGTTCCTGCCGCAGGGCTGGGCCCTGCACAAGGAGCCGACGCTCGGGTTCAAGGAGCTGGAGTGGTTCGCCGACATCGACCTCTTCCACGAGCAGGCGCCCAAAGCCAGCAGGACGTTGGCGGAGGTGCCGGAGCTTTTCGGATACCAGGCGGCGAACGACGCGGCGTACTACAGGCCGGCCAAAGCCGCCGCCGGCGGCGGCGCTGGGGTTCGCCAGAGCAAGAAGGCCCGGATCGAGGTCACCGACGACGAGGATTACCTCATAGTCCCTGATCTTGGTTAA
ACSRRSYSTQRETNREPLATSLPGESSTTSSPGSSLIARVACSRRRLICTTRPRWISPPGLPSLAVHFFLHHSHQWRYPL
RSRLPGCCWLGVGELGVETEKWSGHEDPVRRVRGRGCHGGVLRRRGRAVRALRRRDPRRQQAREQAPAPPARGALRQAPA
LRRLPGESGVHLLRGGPGALLPGLRRAHPRPGHALREPPALPGHRHPRRPRLGFRLQRRLRRPRLRPPRPAQGHHRATAR
RRLRRGAAGALAAAVPAAGLGRRRAPAVLRLRVQRQGKTIAQAPVHVRVHPPDPVSRSCSVLCVLQLHKEPTLGFKELEW
FADIDLFHEQAPKASRTLAEVPELFGYQAANDAAYYRPAKAAAGGGAGVRQSKKARIEVTDDEDYLIVPDLG
GCATGCTCCCGGCGTAGCTACAGTA...
GCATGCTCCCGGCGTAGCTACAGTACACAGAGGGAGACGAACCGGGAGCCCCTGGCCACAAGTCTCCCCGGCGAGTCCTCCACCACAAGCTCGCCCGGCAGCTCACTGATTGCTCGAGTTGCGTGCTCGCGCAGGCGACTTATATGCACCACTCGCCCCCGCTGGATCTCCCCTCCCGGCCTCCCCTCCCTTGCCGTCCACTTCTTCCTCCACCACAGTCATCAGTGGCGTTATCCTCTTCGTTCTCGCCTCCCTGGTTGTTGTTGGCTGGGTGTTGGCGAGCTGGGAGTAGAGACCGAGAAGTGGAGCGGCCATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACGGTGGTGTGCTGCGCCGACGAGGCCGCGCTGTGCGCGCGCTGCGACGTCGAGATCCACGCCGCCAACAAGCTCGCGAGCAAGCACCAGCGCCTCCCGCTCGAGGCGCTCTCCGCCAAGCTCCCGCGCTGCGACGTCTGCCAGGAGAAAGCGGCGTTCATCTTCTGCGTGGAGGACCGGGCGCTCTTCTGCCAGGACTGCGACGAGCCCATCCACGTCCCGGGCACGCTCTCCGGGAACCACCAGCGCTACCTGGCCACCGGCATCCGCGTCGGCCTCGCCTCGGCTTCCGCCTGCAGCGACGCCTGCGACGCCCACGACTCCGACCACCACGCCCCGCCCAAGGCCACCATCGAGCCACCGCACGCCGCCGTCTCCGCCGCGGTGCAGCAGGTGCCCTCGCCGCCGCAGTTCCTGCCGCAGGGCTGGGCCGTCGACGAGCTCCTGCAGTTCTCCGACTACGAGTCCAGCGACAAGGCAAGACGATAGCGCAAGCTCCGGTCCATGTCCGCGTGCACCCACCGGATCCCGTCTCACGTTCTTGCTCTGTTTTATGTGTTTTGCAGCTGCACAAGGAGCCGACGCTCGGGTTCAAGGAGCTGGAGTGGTTCGCCGACATCGACCTCTTCCACGAGCAGGCGCCCAAAGCCAGCAGGACGTTGGCGGAGGTGCCGGAGCTTTTCGGATACCAGGCGGCGAACGACGCGGCGTACTACAGGCCGGCCAAAGCCGCCGCCGGCGGCGGCGCTGGGGTTCGCCAGAGCAAGAAGGCCCGGATCGAGGTCACCGACGACGAGGATTACCTCATAGTCCCTGATCTTGGTTAAATAAGAGAGCGCAGGAGTTTTGTTTCGTCTCCTGATGTGTACGGTGTACCAGAGAAGAATTTTACTGTGTACAAGCTAGTGTCAAGTGTTGTGCATCTTTGACTGTAGTGTCGCTCAATTCTGAACATCTATTAAGCCACTTTTGTTGCTATGCTAATACCAGTCTGAGACACTGATGTTTTTAACAGAACATTTGTCTGATTTTGCTGACACTTCTACTTACAGAGACCACAAGTGAATTAGCTGAGATAAGGTATTTTTCGGTAGGCTCACCAACACAGAATAAGAATCCCCAATGTTTGCCAACTGCCCCAGATACCATTGGAAGCCAGCAAAGTTAGGGCTTGCCTTCCACGAATTGGAAGGGATTGGTTAGGATTTGAAATGGA
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